What a mod changes a recipe, it should be documented along with the mod, even if that mod just adds items of it's own that can be used in substitute of others. For example, Forestry changes the Chest recipe to incorporate it's own Wood Planks.
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Minecraft Versions, Editions and Terms
Official Minecraft Editions
Playstation 3 · Playstation 4 · Playstation Vita · PC · Pi · Pocket · Xbox One · Xbox 360 · Nintendo Switch Blocks & Items Terms used
Adventure Mode · Biome · Biome ID · Block · Block ID · Crafting Recipe · Creative Mode · Dimension · Entity · Entity ID · Item · Item ID · Survival Mode · Technical Block
Biomes
Desert · Extreme Hills · Forest · Hell · Ice Plains · Jungle · Mushroom Island · Ocean · Plains · Sky · Swampland · Taiga
Technical Biomes
Beach · Desert Hills · Extreme Hills Edge · Forest Hills · Frozen Ocean · Frozen River · Ice Mountains · Jungle Hills · Mushroom Island Shore · River · Taiga Hills World Locations & Structures
Birch Tree · Desert Temple · End Portal · Jungle Temple · Jungle Tree · Nether Portal · Oak Tree · Spruce Tree · Stronghold · Village Dimensions Mobs
Angry Zombie · Bat · Blaze · Cave Spider · Chicken · Chicken Jockey · Cow · Creeper · Ender Dragon · Endermen · Ghast · Giant · Horse · Iron Golem · Magma Cube · Mooshroom · Ocelot · Pig · Sheep · Silverfish · Skeleton · Slime · Snow Golem · Spider · Spider Jockey · Squid · Villager · Witch · Wither · Wither Skeleton · Wolf · Zombie · Zombie Pigmen